Solution: kernlab class probability calculations failed; returning NAs

2018-04-10

Howdy! I’m putting this down here for my future reference, as well as for anyone who has spent the couple hours looking for a solution:

kernlab class probability calculations failed; returning NAs

You get this error because you need to use a formula to define your model. For example:

fit.svm.radial <- train(data.train[,!(names(data.train) %in% c('value_change'))], data.train$value_change,
                method='svmRadial',
                trControl=objControl,
                metric = "ROC",
                tunegrid=tunegrid,
                preProcess = NULL
                )

needs to be changed to:

fit.svm.radial <- train(value_change~., data=data.train,
                method='svmRadial',
                trControl=objControl,
                metric = "ROC",
                tunegrid=tunegrid,
                preProcess = NULL
                )

If you found this helpful, let me know in the commentary section below 🙂